Research Program in Genome-Scale Biology

RSS feed of this list

  1. 2012
  2. Characterization of the colorectal cancer-associated enhancer MYC-335 at 8q24: the role of rs67491583

    Tuupanen, S., Yan, J., Turunen, M., Gylfe, A. E., Kaasinen, E., Li, L., Eng, C., Culver, D. A., Kalady, M. F., Pennison, M. J., Pasche, B., Manne, U., de la Chapelle, A., Hampel, H., Henderson, B. E., Le Marchand, L., Hautaniemi, S., Askhtorab, H., Smoot, D., Sandler, R. S., Keku, T., Kupfer, S. S., Ellis, N. A., Haiman, C. A., Taipale, J. & Aaltonen, L. A. 2012 In : Cancer Genetics. 205, 1-2, p. 25-33 9 p.

    Publication: Contribution to journalA1 Refereed journal article

  3. Common variation near CDKN1A, POLD3 and SHROOM2 influences colorectal cancer risk

    Dunlop, M. G., Dobbins, S. E., Farrington, S. M., Jones, A. M., Palles, C., Whiffin, N., Tenesa, A., Spain, S., Broderick, P., Ooi, L-Y., Domingo, E., Smillie, C., Henrion, M., Frampton, M., Martin, L., Grimes, G., Gorman, M., Semple, C., Ma, Y. P., Barclay, E., Prendergast, J., Cazier, J-B., Olver, B., Penegar, S., Lubbe, S., Chander, I., Carvajal-Carmona, L. G., Ballereau, S., Lloyd, A., Vijayakrishnan, J., Zgaga, L., Rudan, I., Theodoratou, E., Starr, J. M., Deary, I., Kirac, I., Kovacevic, D., Aaltonen, L. A., Renkonen-Sinisalo, L., Mecklin, J-P., Matsuda, K., Nakamura, Y., Okada, Y., Gallinger, S., Duggan, D. J., Conti, D., Newcomb, P., Hopper, J., Jenkins, M. A., Schumacher, F., Casey, G., Easton, D., Shah, M., Pharoah, P., Lindblom, A., Liu, T., Smith, C. G., West, H., Cheadle, J. P., Midgley, R., Kerr, D. J., Campbell, H., Tomlinson, I. P., Houlston, R. S. & Swedish Low-Risk Colorectal Canc, Coin Collaborative Grp, Colorectal Tumour Gene Identificat 2012 In : Nature Genetics. 44, 7, p. 770-U197 9 p.

    Publication: Contribution to journalA1 Refereed journal article

  4. Comparative analysis of algorithms for integration of copy number and expression data

    Louhimo, R., Lepikhova, T., Monni, O. & Hautaniemi, S. 2012 In : Nature methods.. 9, 4, p. 351-U50 9 p.

    Publication: Contribution to journalA1 Refereed journal article

  5. Comparison of 6q25 Breast Cancer Hits from Asian and European Genome Wide Association Studies in the Breast Cancer Association Consortium (BCAC)

    Hein, R., Maranian, M., Hopper, J. L., Kapuscinski, M. K., Southey, M. C., Park, D. J., Schmidt, M. K., Broeks, A., Hogervorst, F. B. L., Bueno-de-Mesquit, H. B., Muir, K. R., Lophatananon, A., Rattanamongkongul, S., Puttawibul, P., Fasching, P. A., Hein, A., Ekici, A. B., Beckmann, M. W., Fletcher, O., Johnson, N., Silva, I. D. S., Peto, J., Sawyer, E., Tomlinson, I., Kerin, M., Miller, N., Marmee, F., Schneeweiss, A., Sohn, C., Burwinkel, B., Guenel, P., Cordina-Duverger, E., Menegaux, F., Truong, T., Bojesen, S. E., Nordestgaard, B. G., Flyger, H., Milne, R. L., Arias Perez, J. I., Pilar Zamora, M., Benitez, J., Anton-Culver, H., Ziogas, A., Bernstein, L., Clarke, C. A., Brenner, H., Mueller, H., Arndt, V., Stegmaier, C., Rahman, N., Seal, S., Turnbull, C., Renwick, A., Meindl, A., Schott, S., Bartram, C. R., Schmutzler, R. K., Brauch, H., Hamann, U., Ko, Y-D., Wang-Gohrke, S., Doerk, T., Schuermann, P., Karstens, J. H., Hillemanns, P., Nevanlinna, H., Heikkinen, T., Aittomäki, K., Blomqvist, C., Bogdanova, N. V., Zalutsky, I. V., Antonenkova, N. N., Bermisheva, M., Prokovieva, D., Farahtdinova, A., Khusnutdinova, E., Lindblom, A., Margolin, S., Mannermaa, A., Kataja, V., Kosma, V-M., Hartikainen, J., Chen, X., Beesley, J., Lambrechts, D., Zhao, H., Neven, P., Wildiers, H., Nickels, S., Flesch-Janys, D., Radice, P., Peterlongo, P., Manoukian, S., Barile, M., Couch, F. J., Olson, J. E., Wang, X., Fredericksen, Z., Giles, G. G., Baglietto, L., McLean, C. A., Severi, G., Offit, K., Robson, M., Gaudet, M. M., Vijai, J., Alnaes, G. G., Kristensen, V., Borresen-Dale, A-L., John, E. M., Miron, A., Winqvist, R., Pylkas, K., Jukkola-Vuorinen, A., Grip, M., Andrulis, I. L., Knight, J. A., Glendon, G., Mulligan, A. M., Figueroa, J. D., Garcia-Closas, M., Lissowska, J., Sherman, M. E., Hooning, M., Martens, J. W. M., Seynaeve, C., Collee, M., Hall, P., Humpreys, K., Czene, K., Liu, J., Cox, A., Brock, I. W., Cross, S. S., Reed, M. W. R., Ahmed, S., Ghoussaini, M., Pharoah, P. D. P., Kang, D., Yoo, K-Y., Noh, D-Y., Jakubowska, A., Jaworska, K., Durda, K., Zlowocka, E., Sangrajrang, S., Gaborieau, V., Brennan, P., McKay, J., Shen, C-Y., Yu, J-C., Hsu, H-M., Hou, M-F., Orr, N., Schoemaker, M., Ashworth, A., Swerdlow, A., Trentham-Dietz, A., Newcomb, P. A., Titus, L., Egan, K. M., Chenevix-Trench, G., Antoniou, A. C., Humphreys, M. K., Morrison, J., Chang-Claude, J., Easton, D. F., Dunning, A. M., Network, G. E. N. I. C. A., Investigators, KC. & Grp, A. O. C. S. 2012 In : PLoS One. 7, 8, p. Article Number: e42380 14 p.

    Publication: Contribution to journalA1 Refereed journal article

  6. Computational approaches in high-throughput proteomics data analysis

    Lahesmaa-Korpinen, A-M. 2012 Helsinki: Helsingin yliopisto. 47 p. (Helsinki Biomedical Dissertations Series; vol. 2012, no. 169)

    Publication: Book/anthologyG5 Doctoral Thesis, articles

  7. Contrasting DNA damage checkpoint responses in epithelium of the human seminal vesicle and prostate

    Jäämaa, S. S., Sankila, A. M., Rantanen, V., Peltonen, K. D., Järvinen, P., af Hällström, T. M., Ruutu, M. L., Taari, K., Andersson, L. C. & Laiho, M. 2012 In : Prostate. 72, 10, p. 1060-1070 11 p.

    Publication: Contribution to journalA1 Refereed journal article

  8. Counting absolute numbers of molecules using unique molecular identifiers

    Kivioja, T., Vähärautio, A., Karlsson, K., Bonke, M., Enge, M., Linnarsson, S. & Taipale, J. 2012 In : Nature methods.. 9, 1, p. 72-74 3 p.

    Publication: Contribution to journalA1 Refereed journal article

  9. Efficient Path Kernels for Reaction Function Prediction

    Heinonen, M., Välimäki, N., Mäkinen, V. & Rousu, J. 2012 6 p.

    Publication: Conference contributionA4 Article in conference publication (refereed)

  10. Epithelial integrity as a tumor suppressor mechanism : the interplay between Lkb1 and c‐Myc in breast cancer development

    Partanen, J. 2012 Helsinki: [Johanna Partanen]. 89 p.

    Publication: Book/anthologyG5 Doctoral Thesis, articles

  11. ErbB2-Driven Breast Cancer Cell Invasion Depends on a Complex Signaling Network Activating Myeloid Zinc Finger-1-Dependent Cathepsin B Expression

    Rafn, B., Nielsen, C. F., Andersen, S. H., Szyniarowski, P., Corcelle-Termeau, E., Valo, E., Fehrenbacher, N., Olsen, C. J., Daugaard, M., Egebjerg, C., Bottzauw, T., Kohonen, P., Nylandsted, J., Hautaniemi, S., Moreira, J., Jaattela, M. & Kallunki, T. 2012 In : Molecular Cell. 45, 6, p. 764-776 13 p.

    Publication: Contribution to journalA1 Refereed journal article