Research Program in Genome-Scale Biology

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  1. 2011
  2. Haplotype structure in Ashkenazi Jewish BRCA1 and BRCA2 mutation carriers

    Im, K. M., Kirchhoff, T., Wang, X., Green, T., Chow, C. Y., Vijai, J., Korn, J., Gaudet, M. M., Fredericksen, Z., Pankratz, V. S., Guiducci, C., Crenshaw, A., McGuffog, L., Kartsonaki, C., Morrison, J., Healey, S., Sinilnikova, O. M., Mai, P. L., Greene, M. H., Piedmonte, M., Rubinstein, W. S., Hogervorst, F. B., Rookus, M. A., Collee, J. M., Hoogerbrugge, N., van Asperen, C. J., Meijers-Heijboer, H. E. J., van Roozendaal, C. E., Caldes, T., Perez-Segura, P., Jakubowska, A., Lubinski, J., Huzarski, T., Blecharz, P., Nevanlinna, H., Aittomäki, K., Lazaro, C., Blanco, I., Barkardottir, R. B., Montagna, M., D'Andrea, E., Devilee, P., Olopade, O. I., Neuhausen, S. L., Peissel, B., Bonanni, B., Peterlongo, P., Singer, C. F., Rennert, G., Lejbkowicz, F., Andrulis, I. L., Glendon, G., Ozcelik, H., Toland, A. E., Caligo, M. A., Beattie, M. S., Chan, S., Domchek, S. M., Nathanson, K. L., Rebbeck, T. R., Phelan, C., Narod, S., John, E. M., Hopper, J. L., Buys, S. S., Daly, M. B., Southey, M. C., Terry, M-B., Tung, N., Hansen, T. V. O., Osorio, A., Benitez, J., Duran, M., Weitzel, J. N., Garber, J., Hamann, U., Peock, S., Cook, M., Oliver, C. T., Frost, D., Platte, R., Evans, D. G., Eeles, R., Izatt, L., Paterson, J., Brewer, C., Hodgson, S., Morrison, P. J., Porteous, M., Walker, L., Rogers, M. T., Side, L. E., Godwin, A. K., Schmutzler, R. K., Wappenschmidt, B., Laitman, Y., Meindl, A., Deissler, H., Varon-Mateeva, R., Preisler-Adams, S., Kast, K., Venat-Bouvet, L., Stoppa-Lyonnet, D., Chenevix-Trench, G., Easton, D. F., Klein, R. J., Daly, M. J., Friedman, E., Dean, M., Clark, A. G., Altshuler, D. M., Antoniou, A. C., Couch, F. J., Offit, K. & Gold, B. 2011 In : Human Genetics. 130, 5, p. 685-699 15 p.

    Publication: Contribution to journalA1 Refereed journal article

  3. High CIP2A immunoreactivity is an independent prognostic indicator in early-stage tongue cancer

    Böckelman, C., Hagström, J., Mäkinen, L. K., Keski-Säntti, H., Häyry, V., Lundin, J., Atula, T., Ristimäki, A. & Haglund, C. 2011 In : British Journal of Cancer. 104, 12, p. 1890-1895 6 p.

    Publication: Contribution to journalA1 Refereed journal article

  4. High frequency of TTK mutations in microsatellite-unstable colorectal cancer and evaluation of their effect on spindle assembly checkpoint

    Niittymaki, I., Gylfe, A., Laine, L., Laakso, M., Lehtonen, H. J., Kondelin, J., Tolvanen, J., Nousiainen, K., Pouwels, J., Jarvinen, H., Nuorva, K., Mecklin, J-P., Makinen, M., Ristimaki, A., Orntoft, T. F., Hautaniemi, S., Karhu, A., Kallio, M. J. & Aaltonen, L. A. 2011 In : Carcinogenesis. 32, 3, p. 305-311 7 p.

    Publication: Contribution to journalA1 Refereed journal article

  5. HuR expression is a marker of poor prognosis in renal cell carcinoma.

    Ronkainen, H., Vaarala, M. H., Hirvikoski, P. & Ristimäki, A. 2011 In : Tumor Biology. 32, 3, p. 481-487

    Publication: Contribution to journalA1 Refereed journal article

  6. Ingraft chimerism in lung transplantation: a study in a porcine model of obliterative bronchiolitis

    Päiväniemi, O., Musilova, P., Raivio, P. M., Maasilta, P. K., Alho, H. S., Rubes, J., Aittomaki, K. & Salminen, U-S. 2011 In : Respiratory Research. 12, p. art. 56 7 p.

    Publication: Contribution to journalA1 Refereed journal article

  7. KSHV-Initiated Notch Activation Leads to Membrane-Type-1MatrixMetalloproteinase-Dependent Lymphatic Endothelial-to-Mesenchymal Transition

    Cheng, F., Pekkonen, P. M., Laurinavicius, S., Sugiyama, N., Henderson, S., Günther, T., Rantanen, V., Kaivanto, E., Aavikko, M., Sarek, G., Hautaniemi, S., Biberfeld, P., Aaltonen, L. A., Grundhoff, A., Boshoff, C., Alitalo, K., Lehti, K. & Ojala, P. 2011 In : Cell Host & Microbe. 10, 6, p. 577-590 14 p.

    Publication: Contribution to journalA1 Refereed journal article

  8. LKB1 signaling in advancing cell differentiation

    Udd, L. & Makela, T. P. 2011 In : Familial Cancer. 10, 3, p. 425-435 11 p.

    Publication: Contribution to journalA2 Review in scientific journal

  9. Low penetrance breast cancer susceptibility loci are associated with specific breast tumor subtypes: findings from the Breast Cancer Association Consortium

    Broeks, A., Schmidt, M. K., Sherman, M. E., Couch, F. J., Hopper, J. L., Dite, G. S., Apicella, C., Smith, L. D., Hammet, F., Southey, M. C., Van 't Veer, L. J., de Groot, R., Smit, V. T. H. B. M., Fasching, P. A., Beckmann, M. W., Jud, S., Ekici, A. B., Hartmann, A., Hein, A., Schulz-Wendtland, R., Burwinkel, B., Marme, F., Schneeweiss, A., Sinn, H-P., Sohn, C., Tchatchou, S., Bojesen, S. E., Nordestgaard, B. G., Flyger, H., Orsted, D. D., Kaur-Knudsen, D., Milne, R. L., Perez, J. I. A., Zamora, P., Menendez Rodriguez, P., Benitez, J., Brauch, H., Justenhoven, C., Ko, Y-D., Hamann, U., Fischer, H-P., Bruening, T., Pesch, B., Chang-Claude, J., Wang-Gohrke, S., Bremer, M., Karstens, J. H., Hillemanns, P., Doerk, T., Nevanlinna, H. A., Heikkinen, T., Heikkilä, P., Blomqvist, C., Aittomäki, K., Aaltonen, K., Lindblom, A., Margolin, S., Mannermaa, A., Kosma, V-M., Kauppinen, J. M., Kataja, V., Auvinen, P., Eskelinen, M., Soini, Y., Chenevix-Trench, G., Spurdle, A. B., Beesley, J., Chen, X., Holland, H., Lambrechts, D., Claes, B., Vandorpe, T., Neven, P., Wildiers, H., Flesch-Janys, D., Hein, R., Loening, T., Kosel, M., Fredericksen, Z. S., Wang, X., Giles, G. G., Baglietto, L., Severi, G., McLean, C., Haiman, C. A., Henderson, B. E., Le Marchand, L., Kolonel, L. N., Alnaes, G. G., Kristensen, V., Borresen-Dale, A-L., Hunter, D. J., Hankinson, S. E., Andrulis, I. L., Mulligan, A. M., O'Malley, F. P., Devilee, P., Huijts, P. E. A., Tollenaar, R. A. E. M., Van Asperen, C. J., Seynaeve, C. S., Chanock, S. J., Lissowska, J., Brinton, L., Peplonska, B., Figueroa, J., Yang, X. R., Hooning, M. J., Hollestelle, A., Oldenburg, R. A., Jager, A., Kriege, M., Ozturk, B., van Leenders, G. J. L. H., Hall, P., Czene, K., Humphreys, K., Liu, J., Cox, A., Connley, D., Cramp, H. E., Cross, S. S., Balasubramanian, S. P., Reed, M. W. R., Dunning, A. M., Easton, D. F., Humphreys, M. K., Caldas, C., Blows, F., Driver, K., Provenzano, E., Lubinski, J., Jakubowska, A., Huzarski, T., Byrski, T., Cybulski, C., Gorski, B., Gronwald, J., Brennan, P., Sangrajrang, S., Gaborieau, V., Shen, C-Y., Hsiung, C-N., Yu, J-C., Chen, S-T., Hsu, G-C., Hou, M-F., Huang, C-S., Anton-Culver, H., Ziogas, A., Pharoah, P. D. P., Garcia-Closas, M. & AOCS, KConFab, Genica Network 2011 In : Human Molecular Genetics. 20, 16, p. 3289-3303 15 p.

    Publication: Contribution to journalA1 Refereed journal article

  10. MED12, the Mediator Complex Subunit 12 Gene, Is Mutated at High Frequency in Uterine Leiomyomas

    Mäkinen, N., Mehine, M., Tolvanen, J., Kaasinen, E., Li, Y., Lehtonen, H. J., Gentile, M., Yan, J., Enge, M., Taipale, M., Aavikko, M., Katainen, R., Virolainen, E., Böhling, T., Koski, T. A., Launonen, V., Sjöberg, J., Taipale, J., Vahteristo, P. & Aaltonen, L. A. 2011 In : Science Progress. 334, 6053, p. 252-255 4 p.

    Publication: Contribution to journalA1 Refereed journal article

  11. Male gender is an adverse prognostic factor in B-cell lymphoma patients treated with immunochemotherapy

    Riihijarvi, S., Taskinen, M., Jerkeman, M. & Leppä, S. M. 2011 In : European Journal of Haematology. 86, 2, p. 124-128 5 p.

    Publication: Contribution to journalA1 Refereed journal article